Detection of vesivirus in minks (Neovison vison), Italy 2021
DOI:
https://doi.org/10.12834/VetIt.3472.23552.1Keywords:
Mink, Vesivirus, Respiratory disease, MetagenomicsAbstract
Vesiviruses are important animal pathogens with a broad host range, and they have also been involved in accidental contamination of cells used for the production of drugs for rare and life-threatening human diseases. A vesivirus (family Caliciviridae) was detected in minks (Neovison vison) with respiratory and neurological signs, during syndromic surveillance for SARS-CoV-2 conducted in Italy. The complete genome (8,397 nucleotides in length) of the vesivirus strain ITA/2021/mink/TE (OR130287) was obtained by combining NGS approach with 5’ and 3’ RACE protocols. The virus was seemingly more related (95.9-97.2% nt identity in the partial RNA-dependent RNA polymerase) to American vesivirus isolates 9/1980/US, 12/1980/US, and 20/1980/US dating back to the early 1980s than to recent mink strains. These results highlight the importance of gathering information on the virome of animals.
References
Ghai, R.R., Carpenter, A., Liew, A.Y., Martin, K.B., Herring, M.K., Gerber, S.I., Hall, A.J., Sleeman, J.M., Von Dobschuetz, S., Behravesh, C.B., 2021. Animal reservoirs and hosts for emerging alphacoronaviruses and betacoronaviruses. Emerg. Infect. Dis. 27, 1015–1022. https://doi.org/10.3201/eid2704.203945.
World Organization for animal health, 2019. Response to COVID-19 caused by SARS-CoV-2. [(accessed on 26 December 2023)]. Available online: https://www.woah.org/en/what-we-offer/emergency-preparedness/covid-19/#ui-id-3.
Oreshkova, N., Molenaar, R.J., Vreman, S., Harders, F., Oude Munnink, B.B., Hakze-van der Honing, R.W., Gerhards, N., Tolsma, P., Bouwstra, R., Sikkema, R.S., Tacken, M.G., de Rooij, M.M., Weesendorp, E., Engelsma, M.Y., Bruschke, C.J., Smit, L.A., Koopmans, M., van der Poel, W.H., Stegeman, A, 2020. SARS-CoV-2 infection in farmed minks, the Netherlands, April and May 2020. Eurosurveillance 25, 2001005. https://doi.org/10.2807/1560-7917.ES.2020.25.23.2001005.
Oude Munnink, B.B., Sikkema, R.S., Nieuwenhuijse, D.F., Molenaar, R.J., Munger, E., Molenkamp, R., van der Spek, A., Tolsma, P., Rietveld, A., Brouwer, M., Bouwmeester-Vincken, N., Harders, F., Hakze-van der Honing, R., Wegdam-Blans, M.C.A., Bouwstra, R.J., GeurtsvanKessel, C., van der Eijk, A.A., Velkers, F.C., Smit, L.A.M., Stegeman, A., van der Poel, W.H.M., Koopmans, M.P.G., 2021. Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans. Science 371, 172–177. https://doi.org/10.1126/science.abe5901.
Hammer, A.S., Quaade, M.L., Rasmussen, T.B., Fonager, J., Rasmussen, M., Mundbjerg, K., Lohse, L., Strandbygaard, B., Jørgensen, C.S., Alfaro-Núñez, A., Rosenstierne, MW, Boklund, A, Halasa, T, Fomsgaard, A, Belsham, GJ, Bøtner, A, 2021. SARS-CoV-2 Transmission between mink (Neovison vison) and humans, Denmark. Emerg. Infect. Dis 27, 547–551. https://doi.org/10.3201/eid2702.203794.
Larsen, H.D., Fonager, J., Lomholt, F.K., Dalby, T., Benedetti, G., Kristensen, B., Urth, T.R., Rasmussen, M., Lassaunière, R., Rasmussen, T.B., Strandbygaard, B., Lohse, L., Chaine, M., Møller, K.L., Berthelsen, A.N., Nørgaard, S.K., Sönksen, U.W., Boklund, A.E., Hammer, A.S., Belsham, G.J., Krause, T.G., Mortensen, S., Bøtner, A., Fomsgaard, A., Mølbak, K., 2021. Preliminary report of an outbreak of SARS-CoV-2 in mink and mink farmers associated with community spread, Denmark, June to November 2020. Eurosurveillance 26, 2100009. https://doi.org/10.2807/1560-7917.ES.2021.26.5.210009.
Rabalski, L., Kosinski, M., Mazur-Panasiuk, N., Szewczyk, B., Bienkowska-Szewczyk, K., Kant, R., Sironen, T., Pyrc, K., Grzybek, M., 2022. Zoonotic spill-over of SARS-CoV-2: Mink-adapted virus in humans. Clin. Microbiol. Infect 28, 451. e1–451.e4. https://doi.org/10.1016/j.cmi.2021.12.001.
Paiero, A., Newhouse, E., Chan, E., Clair, V., Russell, S., Zlonsnik, J., Prystajecky, N., Fraser, E., 2022. SARS-CoV-2 in mink farms in British Columbia, Canada: A report of two outbreaks in 2020-2021. Can. Commun. Dis. Rep 48, 274–281. https://doi.org/10.14745/ccdr.v48i06a05.
Tan, C.C.S., Lam, S.D., Richard, D., Owen, C.J., Berchtold, D., Orengo, C., Nair, M.S., Kuchipudi, S.V., Kapur, V., van Dorp, L., Balloux, F., 2022. Transmission of SARS-CoV-2 from humans to animals and potential host adaptation. Nat. Commun 13, 2988. https://doi.org/10.1038/s41467-022-30698-6.
Marcacci, M., De Luca, E., Zaccaria, G., Di Tommaso, M., Mangone, I., Aste, G., Savini, G., Boari, A., Lorusso, A., 2016. Genome characterization of feline morbillivirus from Italy. J Virol Methods 234, 160–163. https://doi.org/10.1016/j.jviromet.2016.05.002.
Lorusso, A., Calistri, P., Mercante, M.T., Monaco, F., Portanti, O., Marcacci, M., Cammà, C., Rinaldi, A., Mangone, I., Di Pasquale, A., Iommarini, M., Mattucci, M., Fazii, P., Tarquini, P., Mariani, R., Grimaldi, A., Morelli, D., Migliorati, G., Savini, G., Borrello, S., D'Alterio, N., 2020. A "One-Health" approach for diagnosis and molecular characterization of SARS-CoV-2 in Italy. One Health 10, 100135. https://doi.org/10.1016/j.onehlt.2020.100135.
Li, H., 2018. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics 34(18), 3094–3100. https://doi.org/10.1093/bioinformatics/bty191.
Scotto–Lavino, E., Du, G., Frohman, M.A., 2006. 5′ end cDNA amplification using classic RACE. Nat Protoc., 1(6), 2555–2562. https://doi.org/10.1038/nprot.2006.480.
Vinjé, J., Estes, M.K., Esteves, P., Green, K.Y., Katayama, K., Knowles, N.J., L'Homme, Y., Martella, V., Vennema, H., White, P.A., Ictv Report Consortium., 2019. ICTV Virus Taxonomy Profile: Caliciviridae. J Gen Virol 100(11), 1469-1470. https://doi.org/10.1099/jgv.0.001332.
Martella, V., Pinto, P., Lorusso, E., Di Martino, B., Wang, Q., Larocca, V., Cavalli, A., Camero, M., Decaro, N., Bányai, K., Saif, L.J., Buonavoglia, C., 2015. Detection and Full-Length Genome Characterization of Novel Canine Vesiviruses. Emerg Infect Dis. 21(8), 1433-1436. https://doi.org/10.3201/eid2108.140900.
Miao, F.M., Li, Y.H., Liu, Y., Zhang, S.F., Miao, F.C., Zhao, J.H., Hu, R.L., 2015. Novel calicivirus from a ferret badger (Melogale moschata) in China. Arch Virol 160(7), 1797-1800. https://doi.org/10.1007/s00705-015-2432-0.
Reuter, G., Pankovics, P., Nagy, G., Szekeres, S., Boros, Á., 2023. A novel vesivirus (family Caliciviridae) in European badgers (Meles meles) in Hungary, 2020/2021. Arch Virol 168(4), 108. https://doi.org/10.1007/s00705-023-05733-6.
He, W.T., Hou, X., Zhao, J., Sun, J., He, H., Si, W., Wang, J., Jiang, Z., Yan, Z., Xing, G., Lu, M., Suchard, M.A., Ji, X., Gong, W., He, B., Li, J., Lemey, P., Guo, D., Tu, C., Holmes, E.C., Shi, M., Su, S., 2022. Virome characterization of game animals in China reveals a spectrum of emerging pathogens. Cell 185(7):1117–1129. https://doi.org/10.1016/j.cell.2022.02.014.
Long, G.G., Evermann, J.F., Gorham, J.R., 1980. Naturally occurring picornavirus infection of domestic mink. Can J Comp Med 44(4):412-417.
Guo, M., Evermann, J.F., Saif, L.J., 2001. Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink. Arch Virol 146(3):479-493. https://doi.org/10.1007/s007050170157.
Yang, B., Wang, F., Zhang, S., Xu, G., Wen, Y., Li, J., Yang, Z., Wu, H., 2012. Complete genome sequence of a mink calicivirus in China. J Virol 86(24):13835. https://doi.org/10.1128/JVI.02582-12.
Guo, Y., Liu, W.J., Song, J., Zong, K., Lin, H., Li., X., Huo, S., Liu, S., Ran, H., Li, H., Liu, P., Huang, H., Gao, G.F., Wu, G., 2021. Parallel isolation of calicivirus and reovirus from lethal co-infected mink during a potential epidemic of farmed mink infec-tions. Biosaf Health 3(5), 281–291.
Wasniewski, M., Boué, F., Richomme, C., Simon-Lorière, E., Van der Werf, S., Donati, F., Enouf, V., Blanchard, Y., Beven, V., Leperchois, E., Leterrier, B., Corbet, S., Le Gouil, M., Monchatre-Leroy, E., Picard-Meyer, E., 2023. Investigations on SARS-CoV-2 and other coronaviruses in mink farms in France at the end of the first year of COVID-19 pandemic. bioRxiv [Preprint] 2, 2023.02.02.526749. https://doi.org/10.1101/2023.02.02.526749. Update in: PLoS One 18(8), e0290444.
Wilder, F.W., Dardiri, A.H., 1978. San Miguel sea lion virus fed to mink and pigs. Can J Comp Med 42(2), 200–204.
Di Martino, B., Di Profio, F., Lanave, G., De Grazia, S., Giammanco, G.M., Lavazza, A., Buonavoglia, C., Marsilio, F., Bányai, K., Martella, V., 2015. Antibodies for strain 2117-like vesiviruses (caliciviruses) in humans. Virus Res 210, 279-282. https://doi.org/10.1016/j.virusres.2015.08.016.
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European Commission
Grant numbers "This research was supported by EU funding within the NextGeneration EU-MUR PNRR Extended Partnership initiative on Emerging Infectious Diseases (Project no. PE00000007, INF-ACT)"
